Which method do you prefer? Muscle MAFFT ClustalW T-coffee Prank
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Translate according to the Standard Vertebrate Mitochondrial Yeast Mitochondrial Mold Mitochondrial; Protozoan Mitochondrial; Coelenterate Mitochondrial; Mycoplasma; Spiroplasma Invertebrate Mitochondrial Ciliate Nuclear; Dasycladacean Nuclear; Hexamita Nuclear Echinoderm Mitochondrial; Flatworm Mitochondrial Euplotid Nuclear Bacterial and Plant Plastid Alternative Yeast Nuclear Ascidian Mitochondrial Alternative Flatworm Mitochondrial Blepharisma Macronuclear Chlorophycean Mitochondrial Trematode Mitochondrial Scenedesmus obliquus Mitochondrial Thraustochytrium Mitochondrial Ancestral Arthropod Mitochondrial (AGG=K) Hemichordate Mitochondrial genetic code
The most common code in my dataset is the Standard Vertebrate Mitochondrial Yeast Mitochondrial Mold Mitochondrial; Protozoan Mitochondrial; Coelenterate Mitochondrial; Mycoplasma; Spiroplasma Invertebrate Mitochondrial Ciliate Nuclear; Dasycladacean Nuclear; Hexamita Nuclear Echinoderm Mitochondrial; Flatworm Mitochondrial Euplotid Nuclear Bacterial and Plant Plastid Alternative Yeast Nuclear Ascidian Mitochondrial Alternative Flatworm Mitochondrial Blepharisma Macronuclear Chlorophycean Mitochondrial Trematode Mitochondrial Scenedesmus obliquus Mitochondrial Thraustochytrium Mitochondrial Ancestral Arthropod Mitochondrial (AGG=K) Hemichordate Mitochondrial genetic code.
GBlocks parameters Options for a less stringent selection: Allow smaller final blocks Allow gap positions within the final blocks Allow less strict flanking positions Options for a more stringent selection: Do not allow many contiguous nonconserved positions